The granularity at which you look at COVID-19 may determine your attitude towards Sars-CoV-2
Scale is one of the most fundamental concepts in Geography. My PhD student just completed her dissertation on “The Consequence of Scale: Process and Policy Implications of Composite Index Modelling Using the Conceptual Framework of GIS-MCDA”, in which she compares biodiversity indices computed at different scales within a city, for example smaller census tracts vs larger social planning neighbourhoods. In Geographic Information Systems (GIS), we usually work with aggregated data, and the scale of aggregation can range from census blocks through postcode areas and neighbourhoods/wards to cities, counties, provinces, and countries. Results of data analytics are known to depend on several aspects of scale, including the observation/measurement scale, at which data are collected; modelling scale, at which data are analyzed; and operational/policy scale(s), at which decisions are made and implemented.
[Skip to second paragraph if you are not interested in the German context of the false positives issue.]
On June 5, 2020, OVALMedia’s Robert Cibis interviewed the Austrian microbiologist and infectious disease specialist Dr. Martin Haditsch about laboratory tests and specifically the PCR test that is used globally to detect the Sars-CoV-2 virus in a person. The interview [in German] broached the issue of false-positive test results in the context of a low-prevalence disease and imperfect tests. Two Youtube copies of the one-hour interview have a total of over 100,000 views at the time of writing. The next day, Swiss entrepreneur and Youtuber Samuel Eckert presented a 20-minute summary and explanation of the false-positive issue using an interactive Excel spreadsheet. His video currently boasts over 225,000 views with 15,000 likes. Possibly in response, the German Federal Minister of Health Jens Spahn, a banker by training, said in a brief interview contained in a tweet from public TV channel ARD on June 14 that if the COVID-19 prevalence continued to drop and testing was simultaneously expanded (as has been the case in many Western countries since mid-April) into the millions then you would eventually obtain more false-positive than correct-positive results.
Karina Reiß, Sucharit Bhakdi: Corona Fehlalarm? Zahlen, Daten und Hintergründe [Corona False Alarm? Numbers, Data and Background]. Goldegg, Vienna Austria. Published 1 June 2020 (eBook, EAN 9783990601907) and 23 June 2020 (paperback, 160 pages, ISBN: 978-3-99060-191-4)
Published in the midst of the SARS-CoV-2 pandemic, „Corona Fehlalarm?“ (German for “Corona False Alarm?”) gives reason for deep reflection on where humanity stands with respect to rational decision-making, public health, and the social contract. In fact, the authors would argue that we are in a panic rather than a pandemic, and that we are not in the midst but at the end of the COVID-19 curve, though we may only be at the beginning of much worse collateral damage inflicted by the global overreaction to the appearance of the novel coronavirus in December 2019.
Summary of a Leaked Report from the Crisis Management Unit KM4 of the German Ministry of the Interior (BMI)
Mainstream and alternative media in Germany are brewing with news of a leaked report assessing the German government’s crisis management with respect to COVID-19. The liberal-conservative magazine Tichys Einblickfirst published extracts of the report that was circulated by its author, a civil servant who has since been suspended. Another alternative media platform, Die Achse des Guten, documents that a draft of the “corona paper” had been presented internally as early as March 23 and the minister’s office was approached by the report’s author on April 25, but as the report continued to be shut down, the author decided to circulate it more widely and it was eventually leaked. The Ministry responded with an unusual Sunday press release dismissing the report as a personal opinion. Interestingly, nine eminent medical experts who were consulted in preparing the report issued a press release of their own on Monday, stating their surprise that the Ministry seems determined to continue ignoring expert analyses of the collateral damage of the COVID-19 response and fail to substantiate its claims that the protective measures taken were effective and are continuously being reassessed.
The COVID-19 lockdown has brought with it an abundance of online professional development opportunities – a welcome escape from the terrors caused by the novel coronavirus (or by the house arrest and social distancing regime itself, if you concur with my view ;). On April 29, cartographer Daniel P. Huffman of Madison, Wisconsin, organized “How to do Map Stuff: A Live Community Sharing Event” with virtual workshops offered by volunteers from around the world, see https://somethingaboutmaps.wordpress.com/2020/03/19/how-to-do-map-stuff/.
Along with several interesting presentations, I listened in to Minnesota-based cartographer Ross Thorn, who went through the process of “Creating an Interactive Fantasy Map” using QGIS and MapBox. The recording is now posted on Youtube at https://www.youtube.com/watch?v=2nmLibB3lGs (starts around minute 9:30). Rather than create a set of islands from scratch, Ross “floods” a digital elevation model (DEM) so that mountains or hills turn into islands while lower elevations are transformed into the open seas… The remainder of that tutorial focused on vectorizing the island boundaries and adding land-use polygons as well as settlement locations with attached information.
It is heartening to hear Ontario’s Premier Doug Ford explain that “we must listen to what the data tells us” about the threat of the novel coronavirus. Commitments from politicians to evidence-based decision-making are refreshing, even though it is well understood that the data (a plural word) do not actually speak to us, unless we ask the right questions of them. In the case of COVID-19, numerous analysts – myself included – have been playing with ways to visualize, interpret, and even predict the curves of confirmed infections, tests conducted, deaths, and cases resolved. Unfortunately, it is becoming increasingly clear that the underlying data are fundamentally flawed and should not be used for public information nor for executive decisions that drastically interfere with our freedoms to live a healthy life, move around, assemble, or conduct business.
number of fatalities case-fatality rate = ——————————— number of cases
Do not use choropleths for your COVID-19 counts, ever!
In a hilarious contribution to Medium, Dr. Noah Haber et al. issued a call to “Flatten the Curve of Armchair Epidemiology“. They analyze the transmission of “well-intended partial truths” about COVID-19 and caution of hidden “viral reservoirs throughout the internet”. To flatten this curve, they recommend fact-checking before posting and go as far as endorsing social-media distancing measures. As with general COVID-19 tips based on armchair epidemiology, misinformation can also be spread through the numerous COVID-19 maps that are widely circulating through the Web. In this article I want to focus on one particular instance of armchair cartography: wrongly mapping COVID-19 count data using choropleth symbology.
Why Germans are more concerned than most about a COVID-19 lockdown
I have never been a supporter of Germany’s conservative parties but their leader, Chancellor Dr. Angela Merkel, is making German politics great again, at least seen from across the Atlantic. In a rare, televised address to the nation on 18 March 2020, Dr. Merkel urges her “dear fellow citizens” to voluntarily practice the hygiene and distancing measures recommended by public health authorities. At the time, there were some 12,000 confirmed COVID-19 cases and 28 deaths in Germany.
Dr. Merkel’s speech can be seen as a last attempt to avoid enforcing stricter isolation rules. There is a unison of voices from politicians, epidemiologists, and the public calling for the “total shutdown” of society to stop the coronavirus spread, both in Germany and over here in Canada. Merkel however conveys a deeper understanding of the risks of social isolation. She characterizes COVID-19 as the greatest challenge faced by Germany since WWII – not in general terms, as was wrongly reported, but in terms of a challenge that requires every single person’s solidarity and commitment to flattening the curve. Merkel acknowledges the degree to which limitations on non-essential activities are already invading not just our personal lives but our understanding of a democratic society. She refers to her upbringing in totalitarian East Germany and the struggle to fight for the freedom of movement that is now effectively being withdrawn. She established that “such restrictions can only be justified if they are absolutely imperative” and “these should never be put in place lightly in a democracy and should only be temporary.”
Why studying Applied Geography is more important than ever
Today was going to be Ryerson University’s Open House for prospective students, those already admitted for Fall 2020 as well as those considering a late application to our programs. The event was cancelled as a consequence of the distancing measures taken to slow the spread of the novel coronavirus. As undergraduate program director for the BA Honours in Geographic Analysis and past graduate program director for the MSA in Spatial Analysis, I would like to share some thoughts about why it is now particularly important to recruit bright students into Geography programs.
This past fall semester of 2019 marked my 15th time teaching our graduate cartography course. When I joined Ryerson University in August 2006, I had already taught MSA 9050 Digital Cartography at the University of Toronto for three years, in Fall 2003, 2004, and 2005. The course was part of the joint Master of Spatial Analysis (MSA) program between UofT’s and Ryerson’s Geography departments, and was also cross-listed with UofT’s graduate course GGR 1913H of the same title. The course had been taught by Byron Moldofsky, who retired as Manager of UofT’s GIS and Cartography Office in 2017, after 37 years of service as a staff member, and continues to be active as an executive member of the Canadian Cartographic Association and a free-lance cartographer.